miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33403187|gb|CF208814.1|CF208814 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTAAATCTTAAAATTGCATATATAGAGTACAGCAACTGTATATGAAAG
AGCTCATCAGTAAAATATAGCACACTGGCTTCCTGTCTAGAATGCATAGCATCATGAGCAATCACCCTTAAAAATTAGCA
GAGTGACTGCTCATGATATTATCTCATTCCATGAAAGCTTGAGCATGCCACACAGCCACACATGTACCGCGGATCAAAAC
CCTCCACCGAGAGCCGGAGACCAATAATCGGCTCCATTGTCACTTCCAACCTGCTGAGTGCACGAAACCGGAACCAGGCA
CAACCCTCTACTCTTCAAGTCCTTTGGTGCATCTTGTGTATCCTGCTGATTAGGTGCTGATCCTTTTCTTTTGAGGCAGT
TGTCGTTCAGGAGCTGACCAGGGTCTTTGGGAAATATACAATTCATTTCGCCTTGAACACACTGTTGGTTCCTCATGTTT
CCTGATGCATTGCCCAAGTACGGAGAGCTAAGGGCCTCAATTTGACCCTGAAGGAATCTGATACACCCAATAGCTTCTAA
CAAGACAGAAGCAGTGTCAGTCTTTCCAAATGGGGAAACTAACTGGTGAAGGGCTGTTATTCTATCACCCAGCTTCTCCT
TTCTCACCTTTAGTGGTGGTTGGCTCGGAGAGGGTTGAACCCTAGGAGAGGAAACTGGCATGATTTGGGACCAAGGAGGT
CTTGATGTCTGAAAGCCTTCATCTCCATGATTATAGGGGTGGCTACTTTG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis
           thaliana GN=LHT1 PE=1 SV=1
          Length = 446

 Score =  130 bits (326), Expect(2) = 3e-51
 Identities = 62/108 (57%), Positives = 74/108 (68%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDM+ET+LVKKL F P  T R   R  YVA TMFV +T                 PTT
Sbjct: 330 PVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTT 389

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIIL 213
           YFLPC++WLA YKPK++SLSW+ NWVCIV G+ LM+LSPIGGLR I++
Sbjct: 390 YFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVI 437



 Score = 93.2 bits (230), Expect(2) = 3e-51
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VALCYFPVAL+GY+ FGN V+DNIL++L KP WLI+TAN+ VVIHVIGSYQI AM
Sbjct: 275 VALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQIYAM 329


>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis
           thaliana GN=LHT2 PE=1 SV=1
          Length = 441

 Score =  127 bits (318), Expect(2) = 7e-51
 Identities = 63/109 (57%), Positives = 72/109 (66%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDM+ETVLVKK+ F P    R I R+LYVAFTM VAI                  PTT
Sbjct: 325 PVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMIVAICVPFFGGLLGFFGGFAFAPTT 384

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIILD 210
           Y+LPCIMWL   KPKRF LSW  NW CI++GV L IL+PIGGLR II++
Sbjct: 385 YYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIIN 433



 Score = 95.1 bits (235), Expect(2) = 7e-51
 Identities = 44/55 (80%), Positives = 48/55 (87%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VA+CYFPVA +GY+ FGNSVDDNILITL KP WLI+ ANM VVIHVIGSYQI AM
Sbjct: 270 VAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMANMFVVIHVIGSYQIFAM 324


>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1
           OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2
          Length = 453

 Score =  136 bits (342), Expect(2) = 2e-50
 Identities = 68/108 (62%), Positives = 74/108 (68%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDM+ET LVKKL F P    R I R +YVA TMF+ I                  PT+
Sbjct: 337 PVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTS 396

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIIL 213
           YFLPCIMWL  YKPKRFSLSW+TNWVCIVLGV LMILS IGGLRQII+
Sbjct: 397 YFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLRQIII 444



 Score = 84.7 bits (208), Expect(2) = 2e-50
 Identities = 38/55 (69%), Positives = 46/55 (83%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VALCYFPVAL+GY  FGN+V DN+L++L  P W I+TAN+ VV+HVIGSYQI AM
Sbjct: 282 VALCYFPVALVGYGVFGNAVLDNVLMSLETPVWAIATANLFVVMHVIGSYQIFAM 336


>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2
           OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1
          Length = 441

 Score =  126 bits (316), Expect(2) = 1e-48
 Identities = 63/108 (58%), Positives = 71/108 (65%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDM+ET LVKK+ F P    R I RTLYVAFTMFVAI                  PTT
Sbjct: 325 PVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMFVAICIPFFGGLLGFFGGFAFAPTT 384

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIIL 213
           Y+LPCIMWL   KPK++ LSW  NW CIV+GV L IL+PIGGLR II+
Sbjct: 385 YYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTILAPIGGLRTIII 432



 Score = 88.2 bits (217), Expect(2) = 1e-48
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VA+CYFPVA + Y+ FGNSVDDNIL+TL KP WLI+ AN  VV+HVIGSYQI AM
Sbjct: 270 VAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIANAFVVVHVIGSYQIYAM 324


>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6
           OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1
          Length = 440

 Score =  107 bits (267), Expect(2) = 2e-43
 Identities = 49/109 (44%), Positives = 69/109 (63%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFD++E ++V K  F  G+  R   RT+YVAFT+F+ ++                 PT+
Sbjct: 324 PVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTS 383

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIILD 210
           +FLP IMWL   KP+RFS++WF NW+ I++GV +M+ S IGGLR II D
Sbjct: 384 FFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIAD 432



 Score = 89.7 bits (221), Expect(2) = 2e-43
 Identities = 38/54 (70%), Positives = 46/54 (85%)
 Frame = -3

Query: 699 ALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           A+CYFPVALI YWAFG  VDDN+L+ L +P WLI+ AN+MVV+HVIGSYQ+ AM
Sbjct: 270 AVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAM 323


>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3
           OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2
          Length = 451

 Score =  108 bits (271), Expect(2) = 2e-40
 Identities = 52/107 (48%), Positives = 68/107 (63%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDMIE+V++KK  F P    R   R  +VA TM +A+                  PTT
Sbjct: 332 PVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHFSALLSFFGGFIFAPTT 391

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQII 216
           YF+PCI+WL   KPKRFSLSW  NW+CI+LGV +MI++PIGGL +++
Sbjct: 392 YFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMIIAPIGGLAKLM 438



 Score = 78.6 bits (192), Expect(2) = 2e-40
 Identities = 34/55 (61%), Positives = 44/55 (80%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VA CYFPVAL+G+W FGN+V++NIL TL  P  LI  AN+ V+IH++GSYQ+ AM
Sbjct: 277 VAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLIIVANIFVIIHLMGSYQVYAM 331


>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5
           OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2
          Length = 448

 Score =  105 bits (262), Expect(2) = 2e-39
 Identities = 52/107 (48%), Positives = 65/107 (60%)
 Frame = -1

Query: 533 VFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTTY 354
           VFD IE+ LVK LKF P  T RL+AR+ YVA    VA+                   T+Y
Sbjct: 333 VFDTIESYLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFFGGLLGFFGGLVFSSTSY 392

Query: 353 FLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQIIL 213
           FLPCI+WL   +PKRFS  W+ +WV IV G+ + IL+PIGG+R IIL
Sbjct: 393 FLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMRHIIL 439



 Score = 78.2 bits (191), Expect(2) = 2e-39
 Identities = 34/55 (61%), Positives = 43/55 (78%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           V +CY  VA+ GYWAFG  V+D++LI+L +P WLI+ AN MV IHVIGSYQ+ AM
Sbjct: 277 VIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIHVIGSYQVFAM 331


>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4
           OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2
          Length = 455

 Score =  103 bits (257), Expect(2) = 1e-38
 Identities = 51/107 (47%), Positives = 65/107 (60%)
 Frame = -1

Query: 536 PVFDMIETVLVKKLKFPPGLTXRLIARTLYVAFTMFVAITXXXXXXXXXXXXXXXXXPTT 357
           PVFDMIE+V+++   F P    R   R  +VA TM +A+                  PTT
Sbjct: 331 PVFDMIESVMIRIWHFSPTRVLRFTIRWTFVAATMGIAVGLPYYSALLSFFGGFVFAPTT 390

Query: 356 YFLPCIMWLAXYKPKRFSLSWFTNWVCIVLGVCLMILSPIGGLRQII 216
           YF+PCIMWL   KPKRFSLSW  NW CI+ G+ LMI++PIGGL ++I
Sbjct: 391 YFIPCIMWLILKKPKRFSLSWCMNWFCIIFGLVLMIIAPIGGLAKLI 437



 Score = 77.4 bits (189), Expect(2) = 1e-38
 Identities = 35/55 (63%), Positives = 45/55 (81%)
 Frame = -3

Query: 702 VALCYFPVALIGYWAFGNSVDDNILITLNKPTWLISTANMMVVIHVIGSYQIXAM 538
           VA CYFPVAL+G+  FGNSV+++IL +L KPT L+  ANM VVIH++GSYQ+ AM
Sbjct: 276 VAFCYFPVALVGFKTFGNSVEESILESLTKPTALVIVANMFVVIHLLGSYQVYAM 330


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  207 bits (528), Expect = 5e-53
 Identities = 104/141 (73%), Positives = 119/141 (84%), Gaps = 5/141 (3%)
 Frame = -1

Query: 653 LKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGCIRFLQGQIEALSSPYLG-NASGN 477
           LKVRKEKLG RI ALHQLVSPFGKTDTASVL EAIG IRFLQ QIEALS PY G  ASGN
Sbjct: 262 LKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGN 321

Query: 476 MRNQQCVQGEMNCIFPKDPGQLLNDNCLKRKGSAPNQQDTQDA----PKDLKSRGLCLVP 309
           MR+QQ +QG+ +CIFP+DPGQL+ND C+KR+G++ +  D Q+A     KDL+SRGLCLVP
Sbjct: 322 MRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVP 381

Query: 308 VSCTQQVGSDNGADYWSPALG 246
           +SCT QVGSDNGADYW+PALG
Sbjct: 382 ISCTLQVGSDNGADYWAPALG 402